GgaEX0008589 @ galGal4
Exon Skipping
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3468511-3484691:-
Coord C1 exon
chr4:3484541-3484691
Coord A exon
chr4:3478547-3478620
Coord C2 exon
chr4:3468511-3476115
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCTTTGCTGTAGATA
3' ss Score
10.5
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
Seq C2 exon
CAGACCATGTTGAAATTCTGAACCGTAAAATTACGGAGCACCAGGACTTCTTGGTGGGAAGCTGCGCATGGCCTTTCTGTATATATCCCCTCTTCCCTTCTCTCGTTCTTTACCACCTCTACAGTAAGCCTGTTGCAGCCTACATGTTAACCAAAAACTGATCAATGGGAATGTCAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAAAAAAGCACTATAGAAACAATTAACAAACAGCGCTCTGTTATATGAGATATACAAGTAGAAAATTATAATAGACTTTTATAACACATTACTTTAACACACTTAATCATTTTATGACTACCATCCTGATAAGTGCATCTGCACAGCGGACTGTTGGTTTACTGTATACTATCGATGGATAAATGTTTGTCTTGTTTTTAAAGTGTTATCTTACTGTTTTGTTTACATCATAGTCTATTGATTTGTTTTAAAGTGTACATCATTATCAAGTATACTCAATACCATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGGCCAGCACTTGAA
R:
TTCCCACCAAGAAGTCCTGGT
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]