GgaEX0009697 @ galGal3
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16707688-16711239:+
Coord C1 exon
chr8:16707688-16707804
Coord A exon
chr8:16709691-16709876
Coord C2 exon
chr8:16711130-16711239
Length
186 bp
Sequences
Splice sites
3' ss Seq
GATATTTAATTATGCTGCAGACT
3' ss Score
5.02
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GTCCCTGTACTGAAGGAAGAGTATCTATCAAGACCAGTAAACACAATTGAAGCTCATCTGCAGTATCAGATTCAAAGAAAAGAAGTGGAAAATGATGAATTAAGGCTGAAAACACAG
Seq A exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
Seq C2 exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'12-15,'12-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF048997=MbeD_MobD=PU(18.8=19.4)
C2:
PF048997=MbeD_MobD=FE(56.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTACTGAAGGAAGAGT
R:
TCTTTAGGTCTTCTGTCTGAACTGC
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event