RnoEX0062096 @ rn6
Exon Skipping
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251007938-251017825:+
Coord C1 exon
chr2:251007938-251008054
Coord A exon
chr2:251011200-251011385
Coord C2 exon
chr2:251017716-251017825
Length
186 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTCTACAATTTTAGAGC
3' ss Score
7.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAAGTGCTTTGAAAGCAAACCGGTTTTCTCAGTCTGTCAAGGTAGTACACGATCGCCTACAGCTCCAAATTCAGAAGAGGGAGGTGGAGAATGAAAGGTTAAAAGAACACATACAG
Seq A exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTAAAAATGAATAAGCAAGAGGCTGTGGCCGTCAAAGAAGCCAGCAGGCAGAAGGCTGAAGCTCTGAAGAAAGCGTCCAAAGTGTACAGACAGAGGCTGAGACACTTTACAGGGGACATCGAGCAGCTCACGTCCCAAATCAGAGATCAG
Seq C2 exon
GAAGCCAAGTTGTCTGAAGCAGTCTCAGCTTCCAATGACTGGAAAAGTCGTTATGAGAAAATCGCAATAGAAAAAACTGAACTGGAAGTTCAGATCGAAACAATGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PU(25.0=64.1)
A:
PF104734=CENP-F_leu_zip=FE(61.0=100),PF0003816=Filament=PU(42.5=82.3)
C2:
PF104734=CENP-F_leu_zip=PD(11.0=29.7),PF0003816=Filament=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAAGCAAACCGGTTTTCTCA
R:
TCTTCATTGTTTCGATCTGAACTTCC
Band lengths:
218-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]