HsaEX6031928 @ hg38
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2 like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr1:86360426-86396262:-
Coord C1 exon
chr1:86396033-86396262
Coord A exon
chr1:86376233-86376418
Coord C2 exon
chr1:86360426-86360536
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTTGCTAATTTTTTTTTTAGAGC
3' ss Score
7.44
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CGGCAAGCAGGTCTAGGAATTCGCCTGGTTCCCACCTCGCGTCCCTTGCCTTCCTTCCTAGTCTACCCACTGTAGTGCCCCCTGCGTCCCGCTCCCTCCTAGCCGACTCAGAGCACAAGAAGGATTGCCACGGTTTCCATTGCAGCAGCCGTGGCGCCTCTGACCCTTTTTTTATATCGCGGCGACGGCGGGCTGTCGTCACGACGACGTGCGGACGCAGCGGCGGGGGC
Seq A exon
AGCTTAGAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAGCAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTACAGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAG
Seq C2 exon
ACTACACTTGCTGCTTTGAAGGATGAAGTTGTATCTGTTGAAAATGAACTCTCAGAATTGCAAGAAGTAGAAAAAAAACAGAAAACCCTTATTGAAATGTATAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417_MULTIEX2-7/12=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.063 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003816=Filament=PU(18.8=82.3)
C2:
PF0003816=Filament=FE(11.9=100),PF115593=ADIP=FE(25.5=100),PF131661=AAA_13=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTCTAGGAATTCGCCT
R:
TCATCCTTCAAAGCAGCAAGTGT
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains