GgaEX0009697 @ galGal4
Exon Skipping
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14939277-14942828:+
Coord C1 exon
chr8:14939277-14939393
Coord A exon
chr8:14941280-14941465
Coord C2 exon
chr8:14942719-14942828
Length
186 bp
Sequences
Splice sites
3' ss Seq
GATATTTAATTATGCTGCAGACT
3' ss Score
5.02
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GTCCCTGTACTGAAGGAAGAGTATCTATCAAGACCAGTAAACACAATTGAAGCTCATCTGCAGTATCAGATTCAAAGAAAAGAAGTGGAAAATGATGAATTAAGGCTGAAAACACAG
Seq A exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
Seq C2 exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804-'14-15,'14-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000038838fB10151
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGTACTGAAGGAAGAGT
R:
TCTTTAGGTCTTCTGTCTGAACTGC
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]