BtaEX0025328 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57831524-57838298:+
Coord C1 exon
chr3:57831524-57831640
Coord A exon
chr3:57835064-57835249
Coord C2 exon
chr3:57838189-57838298
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTACCACTGATATTTTTTAGAGC
3' ss Score
7.64
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAAATGCTTTGAAAGCAAGCCGTTTTTCACAATCAGTGAAAGTAGTACATGAACGACTGCAGTCCCAAATTCATAAAAAGGAAGCAGAGAATGAGAAATTAAAAGAACACATAAAG
Seq A exon
AGCTTAGAAACCCAAATATCAGAATGGAATTTGCAGTTGAAAAAGAATAAGTATGAGGCTGTAGCAATGAAAGAATCAAGTAGGCAAAAAACTATTGCTCTAAAAAAGGCATCTAAAATTTACAAACAAAGGATTGAACATTTTACTGGAGACATGGAAAACCTTACTTCCCAAATTAGAGAGCAG
Seq C2 exon
GAAGCCAAGTTGTCTGAAACAGTTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATAGTAATAGAGAAAACTGAGTTGGAAGTTCAGATCGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_MULTIEX1-9/10=7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.081 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF115593=ADIP=PU(22.5=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAAAGCAAGCCGTTTTTCAC
R:
TTTCATTGTTTCGATCTGAACTTCCA
Band lengths:
218-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development