MmuEX7002206 @ mm10
Exon Skipping
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:145128890-145135734:+
Coord C1 exon
chr3:145128890-145129006
Coord A exon
chr3:145132632-145132817
Coord C2 exon
chr3:145135625-145135734
Length
186 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCTACATTCTTTAGAGC
3' ss Score
6.54
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCTACAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAG
Seq A exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
Seq C2 exon
GAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGTGACTGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-'21-19,'21-13,31-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003816=Filament=PU(44.0=76.2)
C2:
PF0003816=Filament=FE(33.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACAGGCTTTCTCAATCA
R:
TTCATTGTTTCGATCTGCACTTCC
Band lengths:
210-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types