HsaEX6031928 @ hg19
Exon Skipping
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86838114-86848041:-
Coord C1 exon
chr1:86847925-86848041
Coord A exon
chr1:86841916-86842101
Coord C2 exon
chr1:86838114-86838223
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTTGCTAATTTTTTTTTTAGAGC
3' ss Score
7.44
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCAAATACTTTGAAAGCAAACCGTTTTTCCCAATCAGTAAAAGTAGTACATGAACGACTACAGATCCAAATTCATAAAAGGGAAGCCGAGAACGATAAGTTGAAAGAATATGTAAAG
Seq A exon
AGCTTAGAAACCAAGATAGCCAAGTGGAACCTGCAATCAAGAATGAATAAGAATGAGGCTATAGTGATGAAAGAAGCAAGTAGGCAAAAAACTGTAGCTTTAAAAAAGGCATCTAAAGTTTACAAACAAAGGCTTGACCATTTTACAGGAGCTATTGAAAAGCTTACTTCCCAAATTAGAGATCAG
Seq C2 exon
GAAGCCAAGTTGTCTGAAACAATTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATTGTGATAGAAAAAACCGAATTGGAAGTACAGATTGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-'9-15,'9-13,11-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=PU(2.6=20.5)
A:
PF0003816=Filament=PU(18.8=82.3)
C2:
PF0003816=Filament=FE(11.6=100),PF115593=ADIP=PU(16.1=59.5),PF131661=AAA_13=PU(10.7=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATACTTTGAAAGCAAACCGT
R:
TGTTTCAATCTGTACTTCCAATTCGG
Band lengths:
219-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)