GgaEX0012168 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25810242-25811145:-
Coord C1 exon
chr5:25811105-25811145
Coord A exon
chr5:25810803-25810923
Coord C2 exon
chr5:25810242-25810278
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGGCAATCCCATAGTTC
3' ss Score
4.61
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
Seq A exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
Seq C2 exon
CCCCTTCAGAAATCCTCGATGCCACGGAGGAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.146 C2=0.769
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(17.8=100)
A:
PF127962=Ank_2=FE(58.0=100),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=PD(11.0=61.5),PF127962=Ank_2=PU(13.9=76.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]