DreEX0026722 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7726343-7742378:+
Coord C1 exon
chr25:7726343-7726542
Coord A exon
chr25:7737023-7737143
Coord C2 exon
chr25:7739275-7742378
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGCTTGATGTTTTCCTCAGTTG
3' ss Score
7.04
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GAGCATCTAAACTATGTGTCGGAGATCTCCCAGGATGAGCTTTTCATCTTGGACCCGGAGCTGGTCACCAAGGAGACGGTGGGCACGTCGCCCGGAATGCCGGGGGCGATGGAAACGGTTGTTGGGGGATGTGGATGTTCCAACAGCACAGACCAGTTCGCTTTTCCTGCCTGCTCTCCAGGGCCTTCTCCACTCTGCAG
Seq A exon
TTGGAACAGATGCATGAAGAAGGAGCGGATCTCTCGGTCCAGGACCATTTAGGTTGCACCATCCTCCATCAGGCAGTCATTTTAGGTCACAAAGAGATTGTGAAGTTTATCACTGAAAACG
Seq C2 exon
GGTGAAACTCCAAAGATGTACGCAGAGAGAACTCGAGACTACGAGCTAGCTGAATATTTGGAAAACCAACAACACCATCAAATGATCCAGAGAGATGACCATGAGACGGCAGTGTGACTGGACATCTTTTCTGTCCACCACTAAAACCACAGCCACCGTCTCAACGGTGGCCAGTTTGATACAGTATACGGCCACATGTTAGCAATGCTACGTGGCAGCATATGTGTGGAAATGACCATGTTCGCTCTCTGTATTGATCGTAACGCCAAGCAGACAGTGTTTGTGTCACGTTTCTGAACGCATGAGTCCCGTCCTGATGCAAAACTGCATCGCTCTGCTCTTTAGGACAGGATTAGGAAAAAAAATTGTGGAATTTCAGGGCTGAAGCGAAGTACTATTACTTTTATTACTATTTTATTACTATTACTATTCATTTTAAAAACTACTCTTGTTCTCATCAGGGCTGGGCCGATAAACGATATTATATCGAATTGCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025_MULTIEX1-6/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.220 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=FE(47.1=100),PF127962=Ank_2=PU(0.1=0.0)
C2:
PF127962=Ank_2=PD(39.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGTTGTTGGGGGATGT
R:
ACGGTGGCTGTGGTTTTAGTG
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]