RnoEX6013176 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64379985-64393268:-
Coord C1 exon
chr4:64393231-64393268
Coord A exon
chr4:64389860-64389980
Coord C2 exon
chr4:64379985-64380021
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCATGTCTCTTTTTCTCAGCTC
3' ss Score
8.55
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CAATTCTGCAGGCAGTCATAACTGGTGACCTTATGAAG
Seq A exon
CTCATGGAAAGCTATAAGAATGGAGGGAGTTTATTAATTCAGGGACCCGGGCACTGTTCCCTCCTTCACTACGCAGCCAAGACTGGCAATGGGGAGATCGTGAAGTACATCCTTGACCATG
Seq C2 exon
GACCTGCGGAATTACTGGACATGGCAGACAGTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'48-51,'48-49,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(10.4=84.6)
A:
PF127962=Ank_2=PU(20.2=46.3)
C2:
PF127962=Ank_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]