HsaEX0019455 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137082123-137096953:-
Coord C1 exon
chr7:137096916-137096953
Coord A exon
chr7:137092621-137092741
Coord C2 exon
chr7:137082123-137082159
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTATGTCTCTCTTTGCAGCTA
3' ss Score
11.92
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CAATTTTGCAGGCAGTAATAGCTGGTGATCTTATGAAG
Seq A exon
CTAATAGAAAGCTATAAAAATGGAGGCAGTCTGCTAATTCAGGGACCAGACCACTGTTCACTCCTTCACTACGCAGCTAAAACCGGCAACGGGGAGATTGTGAAATATATCCTTGACCACG
Seq C2 exon
GACCTTCCGAGTTATTGGATATGGCAGACAGTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(20.2=46.3)
C2:
PF127962=Ank_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)