GgaEX6002516 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57780314-57791544:+
Coord C1 exon
chr1:57780314-57780351
Coord A exon
chr1:57781898-57782018
Coord C2 exon
chr1:57789126-57791544
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTATGTGTTTTTTTTCCTAGTTC
3' ss Score
8.45
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CACTTTTACAGGCAGTCATAGCTGGTGATCTGCTGAAG
Seq A exon
TTCATAGAATGCTGTAAAAAAGGAGCCAATTTGCTAATCCAAGGACCTGACCACGGCTCCCTGTTGCACCACGCTGCCAAGAGTGGGCATGGCGAGATTGTGAAGTATATCCTGGAACATG
Seq C2 exon
GTCCATCTGAATTACTGGACATGACAGACAGTGAAACGTAAGTACAGTCTACCCTGTCTGTATTTGTATTATGCTAGCCAACTTCACTTGTTTTTCAAAATGGCCCATCTCTTTAAAAACAAACAAAAAAAACCCCACAGAAGTGCCTTCAAATCTGAAAATAACAGACGCATATGTAGCTTTTAGACCTAGAGCAAATGTTTCTTGAACTCCAGAAAGGATTTCCTCTCTACTGCTTCCCATTTCTCATAAATCTTTTTAGAGAGATACAAGTCCTGCACTGAACTTTGATGTTTCCAGAATCTAGTCATTGAGGATCAACATGAAGGATTGATTTCAAAAGTCAGGACAAGACTTTTCTTATTCAGTGCTGGATGCTCTGCCTTAGTTGTTCTAAATGGATACAGCTTGTGCCATCAAAGATTTCTCTCAAGTAGTTAGAAACTCAATCAACTCTATTATTATTTAAAAAAAGACTTTACTTTCCAAATCTCTGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'44-36,'44-34,45-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.538
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(15.4=100)
A:
PF127962=Ank_2=FE(51.3=100)
C2:
PF127962=Ank_2=PD(11.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAGTCATAGCTGGTGA
R:
TGGAGTTCAAGAAACATTTGCTCT
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]