DreEX6006479 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38868992-38874418:+
Coord C1 exon
chr7:38868992-38869041
Coord A exon
chr7:38871677-38871797
Coord C2 exon
chr7:38874382-38874418
Length
121 bp
Sequences
Splice sites
3' ss Seq
TAACTGCATTTTCTGTGCAGTTG
3' ss Score
7.02
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
TGTCAGTGGACAGTCTAATTGAATGTGTGAAAAAGAAGGACCATCAGAAG
Seq A exon
TTGAAGGAGCTGCATAAGAAAGGGGCCGACCTGTGTGTGCAGGACCCTGCTGGACGGACCCTATTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAAATACATCATTGATAATG
Seq C2 exon
CACCCACCGATATCCTGGATGTAACAGAGAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'42-45,'42-43,43-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.256
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(18.0=100)
A:
PF127962=Ank_2=FE(44.9=100),PF127962=Ank_2=PU(1.3=2.4)
C2:
PF127962=Ank_2=PD(6.7=46.2),PF127962=Ank_2=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGACAGTCTAATTGAATG
R:
TTTCTTTCTCTGTTACATCCAGGA
Band lengths:
85-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]