BtaEX6028853 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101919351-101947467:-
Coord C1 exon
chr4:101947340-101947467
Coord A exon
chr4:101944435-101944557
Coord C2 exon
chr4:101919351-101919376
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCTTCTTTCTCCCAGAAT
3' ss Score
8.21
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTAATGGAGATTTCTCAAGATGAGATTTTTATTCTGGACCCAGATATGGTGTTGTCACAGCAGGCGGGAACACCGCCAGGAATGCCTGACCTGGTGGTGGAGCAAGCCTCGGG
Seq A exon
AATGACGGACTGGTGGAATCCTGCTCTCCGGAAACGCATGCTGAGCGACAGTGGGCTGGGGATGATAAGCCCGCATTATGAAGACTCGGATCTGAAAGATTTCAGCCACTCCCGAGTGCTACA
Seq C2 exon
GTCACCAGTCTCTTCAGAAGATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTAATGGAGA
R:
CGTGATCTTCTGAAGAGACTGGTG
Band lengths:
154-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]