HsaEX0019446 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137128823-137150781:-
Coord C1 exon
chr7:137150654-137150781
Coord A exon
chr7:137148235-137148357
Coord C2 exon
chr7:137128823-137128848
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGTGCCCTTCTTTCTCTCAGGAT
3' ss Score
8.93
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTGATGGAGATTTCCCAAGATGAGATTTTTATTCTGGACCCAGATATGGTGGTGTCACAGCCGGCGGGGACACCTCCGGGCATGCCTGACCTGGTGGTGGAACAAGCCTCGGG
Seq A exon
GATCTCAGACTGGTGGAATCCTGCCCTGCGGAAACGCATGCTGAGTGACAGTGGGCTGGGGATGATAGCTCCCTATTATGAGGACTCAGATCTGAAAGATCTCAGCCACTCCCGCGTGCTACA
Seq C2 exon
GTCACCAGTCTCTTCAGAAGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTGATGGAGA
R:
CATGATCTTCTGAAGAGACTGGTGA
Band lengths:
154-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)