MmuEX6003733 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36894776-36915509:-
Coord C1 exon
chr6:36915382-36915509
Coord A exon
chr6:36913633-36913749
Coord C2 exon
chr6:36894776-36894801
Length
117 bp
Sequences
Splice sites
3' ss Seq
GGTGCCATTTTTTGCCCCAGGCT
3' ss Score
6.74
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTGATGGAGATTTCTCACGATGAAATTTTTATTCTGGACCCAGATATGGTGGTGTCACAGCAGGCAGGGACCCCTCCAGGAATGCCTGACCTGGTGGTTGAACAGGCTTCTGG
Seq A exon
GCTGTCTGACTGGTGGAACCCTGCCCTGAGGAAACGTATGCTGAGTGACAGTGGGATGATCACACCCCACTATGAGGACTCAGATCTGAAAGACTTCAGCCACTCCAGAGTGCTACA
Seq C2 exon
GTCCCCAGTCTCTTCAGAAGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'56-58,'56-54,57-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTGATGGAGA
R:
CATGATCTTCTGAAGAGACTGGGG
Band lengths:
154-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types