GgaEX6002518 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57748228-57765514:+
Coord C1 exon
chr1:57748228-57748355
Coord A exon
chr1:57748962-57749087
Coord C2 exon
chr1:57765489-57765514
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCATCCCTTCCTAGAAT
3' ss Score
9.57
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTGACGGAAATTTCGCAGGACGAGATTTTTATTCTGGACCCAGAGCTGGTAATGTCACAGCAGGGGGGGACGCCACCTGGAATGCCTGATCTGGTAGTGGAGCAGGCCTCTGG
Seq A exon
AATATCAGATCGGTGGAACCCTGCTGTTCGAAAGAGGATGCTGAGCGACAGTGGCCTTGGCAAGATTTCCCCACACTACGAGGTACCTGACAAACAAAAGGACGCCAGCCAGACCTATATACTGCA
Seq C2 exon
GTCACCAGTTTCTTCAGAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'40-32,'40-30,42-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(7.7=14.0)
C2:
PF127962=Ank_2=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTGACGGA
R:
CTTGATCTTCTGAAGAAACTGGTGAC
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]