DreEX6006481 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38845050-38855385:+
Coord C1 exon
chr7:38845050-38845243
Coord A exon
chr7:38851795-38851896
Coord C2 exon
chr7:38855329-38855385
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCGGTGTTCCTTTAGGGT
3' ss Score
10.45
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGCATCTCAACTACGTGACTGAAATTTCTCAGGATGAGCTGTTTGTTTTGGACCCAGAGCTGGTGGTCACAGAGACTGTTAGCACATCACCTGGCATGCCAGACCTGGTGGACTCTGGTGAAGTCCAGTCCGATCCACACAAATTTGCCTTTCCGTCATCCTCTTCTTCACCACCAAACACACCTGGACCTAG
Seq A exon
GGTTGCAGAGCTGCAAAGGAAGCGTGTTTCCAGTGACAGTTCGGTGGCAGAAGCACTTGCACACAGTGACTCGCTCAGATCAGCCAAGCCAGCTCTCTGCAG
Seq C2 exon
AGCTGGGGGTGTTCATCGCTCAAATACAACCGCAGCAGATTTCAAACCTACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'35-38,'35-36,38-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.524 C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
PF054077=Peptidase_C27=PU(17.3=37.1)
C2:
PF054077=Peptidase_C27=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCTCAACTACGTGACTGA
R:
AGGTTTGAAATCTGCTGCGGT
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]