RnoEX0027521 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64431354-64453531:-
Coord C1 exon
chr4:64453404-64453531
Coord A exon
chr4:64451679-64451795
Coord C2 exon
chr4:64431354-64431379
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGTGCCACTTTTGCCCCAGGCT
3' ss Score
6.8
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTGATGGAGATTTCTCATGATGAGATTTTTATTCTGGACCCAGATATGGTGGTGTCACAGCAGGCAGGGACACCTCCAGGAATGCCAGACCTAGTGGTTGAACAGGCTTCTGG
Seq A exon
GCTGTCTGACTGGTGGAACCCTGCCCTGAGGAAACGTATGCTGAGTGACAGTGGGATGATCACACCCCACTATGAGGACTCAGATCTGAAAGACTTCAGCCACTCCAGAGTGCTACA
Seq C2 exon
GTCACCAGTCTCTTCGGAAGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'44-47,'44-43,45-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTGATGGAGA
R:
CATGATCTTCCGAAGAGACTGGTG
Band lengths:
154-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]