GgaEX6002518 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59674678-59691965:+
Coord C1 exon
chr1:59674678-59674805
Coord A exon
chr1:59675412-59675537
Coord C2 exon
chr1:59691940-59691965
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCATCCCTTCCTAGAAT
3' ss Score
9.57
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
GAACATTTGCACTTTGTGACGGAAATTTCGCAGGACGAGATTTTTATTCTGGACCCAGAGCTGGTAATGTCACAGCAGGGGGGGACGCCACCTGGAATGCCTGATCTGGTAGTGGAGCAGGCCTCTGG
Seq A exon
AATATCAGATCGGTGGAACCCTGCTGTTCGAAAGAGGATGCTGAGCGACAGTGGCCTTGGCAAGATTTCCCCACACTACGAGGTACCTGACAAACAAAAGGACGCCAGCCAGACCTATATACTGCA
Seq C2 exon
GTCACCAGTTTCTTCAGAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'29-30,'29-29,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.256 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGCACTTTGTGACGGA
R:
CTTGATCTTCTGAAGAAACTGGTGAC
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]