DreEX6000526 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4610353-4612604:-
Coord C1 exon
chr4:4612567-4612604
Coord A exon
chr4:4611968-4612088
Coord C2 exon
chr4:4610353-4610389
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTGTGTGTGTGTCAGGTG
3' ss Score
10.54
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTCTGCTGTCGGCGGCTGCGAAAGGGGACTTGACTGCG
Seq A exon
GTGTCATCGTCCTGCAGGAGTGGGCTTAGTCTGCTGGTGCGGGACGCTATGGGCTGCACCGCTCTGCATTTGGCTGCACATCACGGACACGCAGACGTGGTGAGCTTCATTCTGGAGCATG
Seq C2 exon
GGTCAAAGCTGATGTTGGATTTAACAGAGCGAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'33-41,'33-40,34-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.4=100)
A:
PF127962=Ank_2=FE(41.2=100)
C2:
PF127962=Ank_2=PD(7.2=53.8),PF127962=Ank_2=PU(14.7=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]