RnoEX6017864 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80845232-80846108:-
Coord C1 exon
chr3:80846065-80846108
Coord A exon
chr3:80845338-80845458
Coord C2 exon
chr3:80845232-80845265
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCCCATCGCTCTCAGCTC
3' ss Score
6.38
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAAGAGCTGATTGAAGCTGCCAAGAGGAATGACTTCTGCAAG
Seq A exon
CTCCAGGAACTACACCGAGCAGGAGGTGACCTCATGCACCGCGACCATCAGAGCCGCACACTCCTGCACCACGCAGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTCGATCATG
Seq C2 exon
CACCACCAGAGATCCTCGATGCTGTGGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'52-62,'52-60,54-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.463 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
PF138571=Ank_5=PU(7.0=9.8)
C2:
PF138571=Ank_5=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]