MmuEX6103069 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91934056-91934859:-
Coord C1 exon
chr2:91934816-91934859
Coord A exon
chr2:91934166-91934286
Coord C2 exon
chr2:91934056-91934089
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCCCACTGCCCTTAGCTC
3' ss Score
7.07
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAAGAACTGATTGAAGCAGCCAAGAGGAATGACTGCTGCAAG
Seq A exon
CTCCAGGAGCTACACCGAGCAGGAGGTGACCTCATGCACCGTGACCAGAAGAGCCGCACGCTCTTGCACCACGCGGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTGGATCATG
Seq C2 exon
CACCTCCAGAGATCCTTGATGCTGTGGAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'58-96,'58-93,59-96
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.463 C2=0.583
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(11.6=73.3)
A:
PF127962=Ank_2=FE(42.1=100)
C2:
PF127962=Ank_2=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types