GgaEX6002516 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59706120-59714968:+
Coord C1 exon
chr1:59706120-59706157
Coord A exon
chr1:59707704-59707824
Coord C2 exon
chr1:59714932-59714968
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTATGTGTTTTTTTTCCTAGTTC
3' ss Score
8.45
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CACTTTTACAGGCAGTCATAGCTGGTGATCTGCTGAAG
Seq A exon
TTCATAGAATGCTGTAAAAAAGGAGCCAATTTGCTAATCCAAGGACCTGACCACGGCTCCCTGTTGCACCACGCTGCCAAGAGTGGGCATGGCGAGATTGTGAAGTATATCCTGGAACATG
Seq C2 exon
GTCCATCTGAATTACTGGACATGACAGACAGTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(20.7=46.3)
C2:
PF127962=Ank_2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]