GgaEX0014620 @ galGal4
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
potassium channel, voltage gated eag related subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:6250]
Coordinates
chr3:21690147-21706104:+
Coord C1 exon
chr3:21690147-21690275
Coord A exon
chr3:21698733-21698851
Coord C2 exon
chr3:21705712-21706104
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGTTTTATTTTTGAGGTT
3' ss Score
4.36
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GAACACCTGTCTGGTTCTTTGTGAAAATTGCTCCAATCCGAAATGAGCAGGATAAAGTGGTTTTATTTCTCTGCACTTTCAATGACATCACGGCTTTCAAGCAGCCCATTGAGGATGATTCATGTAAAG
Seq A exon
GTTGGGGAAAGTTTGCTCGCTTGACCCGTGCCCTCACAAGCAGCCGAGGTGTGCTGCAGCAGCTTGCTCCGAGTGTGCAGAAAGGAGAGAATGTTCACAAGCACTCACGACTTGCTGAG
Seq C2 exon
GTACTGCAGCTGGGCTCCGAAATTCTCCCACAGTACAAACAAGAAGCACCAAAGACTCCGCCACATATAATTTTGCATTATTGTGTTTTCAAGACTACCTGGGACTGGATCATCTTGATTTTAACCTTCTACACTGCTATTTTGGTCCCTTACAATGTCTCCTTTAAAACCAAACAGAACAATGTGGCATGGCTAGTAGTGGACAGCATTGTAGATGTCATTTTTTTGGTAGACATCGTACTTAATTTCCATACCACCTTTGTGGGGCCAGCAGGAGAGGTGATCTCTGACCCAAAGCTGATTCGCATGAATTACTTGAAGACCTGGTTTGTGATCGATCTGCTCTCATGCTTGCCATATGATGTGATCAACGCATTTGAGAATGTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'2-6,'2-4,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(41.3=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.8),PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAGCAGCCCATTGAGGA
R:
GCTGTCCACTACTAGCCATGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]