MmuEX6030130 @ mm10
Exon Skipping
Gene
ENSMUSG00000058248 | Kcnh1
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
Coordinates
chr1:192238725-192277171:+
Coord C1 exon
chr1:192238725-192238853
Coord A exon
chr1:192241919-192242037
Coord C2 exon
chr1:192276698-192277171
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTGCCTGCTTCAGGTT
3' ss Score
10.49
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCGATCAGGAACGAACAGGATAAAGTGGTCCTGTTCCTTTGCACTTTCAGCGACATAACTGCATTCAAGCAGCCCATCGAGGACGACTCCTGCAAAG
Seq A exon
GTTGGGGGAAGTTTGCCCGACTGACCAGAGCTCTGACAAGCAGCAGGGGAGTCCTGCAGCAGCTGGCCCCCAGTGTACAGAAGGGTGAGAATGTTCACAAGCACTCGCGCCTGGCAGAG
Seq C2 exon
GTCCTGCAGCTGGGTTCAGACATCCTTCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACGTGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCTTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAATGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTTTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATATCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTGTCCTGTTTGCCGTATGACGTCATCAACGCTTTTGAGAACGTGGATGAGGTTAGTGCCTTTATGGGTGATCCAGGGAAGATTGGTTTTGCTGATCAGATCCCACCACCACTGGAGGGGAGAGAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058248-'6-6,'6-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NO
C2:
PF0052026=Ion_trans=PU(37.2=58.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGCACTTTCAGCGACA
R:
AGCCAGGCCACATTATTCTGC
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types