RnoEX0046017 @ rn6
Exon Skipping
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:110973413-111009965:+
Coord C1 exon
chr13:110973413-110973541
Coord A exon
chr13:110978119-110978237
Coord C2 exon
chr13:111009573-111009965
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCTGCCTGCTTCAGGTT
3' ss Score
10.36
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGACACCTGTGTGGTTTTTTGTGAAGATCGCTCCAATCAGGAACGAACAGGATAAAGTGGTTCTGTTCCTTTGCACTTTCAGTGACATAACGGCATTCAAGCAGCCCATTGAGGACGACTCCTGCAAAG
Seq A exon
GTTGGGGGAAGTTTGCTCGACTGACGAGAGCTCTGACAAGCAGCAGGGGAGTCCTGCAGCAGCTGGCCCCCAGTGTGCAGAAGGGTGAGAATGTTCACAAGCACTCGCGCCTGGCAGAG
Seq C2 exon
GTCCTGCAGCTGGGTTCAGACATCCTCCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACATGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCCTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAACGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTCTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATCTCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTCTCCTGTTTGCCATATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NO
C2:
PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCAGCCCATTGAGGAC
R:
GACATCCACGATGCTGTCCAC
Band lengths:
253-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]