DreEX6099961 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37956326-37962161:+
Coord C1 exon
chr22:37956326-37956454
Coord A exon
chr22:37958752-37958870
Coord C2 exon
chr22:37961769-37962161
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCATCTGATGTTAGGCT
3' ss Score
5.26
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GGATGCCAGTGTGGTTCTTCGTCAAAATCGCTCCCATCCGAAACGAACAGGACAAAGTTGTGCTTTTCCTCTGCACCTTCAGCGACATCACTGCCTTCAAGCAGCCAATTGAAGACGACTCCTCTAAAG
Seq A exon
GCTGGGGGAAGTTTGCTCGCCTGACACGGGCGCTGACCAGCAGTCGTGGTGTTTTACAGCAGCTGGCGCCGACTGTCCAACGGGGAGAAAACGTGCTTAAACACTCACGTCTGGCTGAG
Seq C2 exon
GTGTTGCAGCTGGGATCAGACATTCTCCCGCAGTACAAGCAAGAGGCTCCCAAAACGCCTCCGCACATCATCCTGCACTACTGCACCTTCAAGACCACCTGGGACTGGGTGATCCTCATCCTCACCTTCTACACCGCCATCATGGTGCCCTACAACGTGTCCTTTAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATTGTGGATGTGATTTTCCTGGTGGACATTGTGCTCAACTTCCACACCACCTTTGTTGGGCCGGCGGGAGAGGTGATCTCAGACCCCAAACTGATCCGTATGAACTACGTCAAGACCTGGTTCGTGATCGACCTGCTGTCCTGCCTGCCGTACGACGTCATTAACGCCTTCGAGAATGTTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.2=70.5)
A:
NO
C2:
PF084125=Ion_trans_N=WD(100=45.0),PF0052026=Ion_trans=PU(29.5=49.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTGTGGTTCTTCGTCAA
R:
ATGAGGATCACCCAGTCCCAG
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]