GgaEX0018868 @ galGal3
Exon Skipping
Gene
ENSGALG00000012473 | MMAD_CHICK
Description
NA
Coordinates
chr7:36562557-36565536:-
Coord C1 exon
chr7:36564966-36565536
Coord A exon
chr7:36563001-36563145
Coord C2 exon
chr7:36562557-36562774
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTGTCTTCTCAGGTG
3' ss Score
11.43
5' ss Seq
TATGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
CACAAACGGCCCTTCTGCTCAGCATCGCGGCCCCTCAGCTCCCCCGGGCCAGGCCTGACCCGCGCCGCACTACTGACCCCTACCGCACCAAAGCGGCGTTGCTTACCCCACTCTGGCCAGGCCCTACCCGAGGGGAGCCCAGCCCCGACCAATCGATTGCCGGCTCGCTCGCCCCGCCGCCCCGAGCCCGCTTCAAACACGCCCCCACCACTGATCGATGGCTCATCGAGCGGCTGCTCAGGTCTGGCGGCCGAGGGGGTGAGGGCGGGGCGGAAGCGGCCGCCGCCATTTTGCAGGAAGCGCTGCGCGGGGCTCCTGGGTGCTCCCGCTGCGCCGCGGCCGTGTGACGGGGGAGAGGGGGGCGGCCCTGAGGGGGGAGCGGCCCGGGGTCGGCCGGCCGGCTGGTCGGTGCGGGGCCTCAGGAGACGCTGCGTTTGCTTCTCTTGCAGGAGGAGCCGGAGCGCTGGGCGAAGGGCTGCTGAGTGTCTGCCATGGCCAAC
Seq A exon
GTGCTCTGTAACAGAGCAAGATTGGTCACCTACCTACCAGGGTTTTATTCCTTAGTCAAAAGAGTTGTAAATCCCAAGGCTTTTTCTACAGCAGGTTCCTCTGGCTCAGACGAGCCTCATGTTGCTGCTACACCTCCTGATTTAT
Seq C2 exon
GTCCAAGAACTGTATGGCCCGATGAAGTAATGGGTCCATTTGGTCCTCAGGACCAGAGATTCCAGTTGCCTGGTAATATTGGTTTTGACTGTCACCTAAATGGTACTGCTGCTCAGAGGAAAAGCCAAGCCTCAAAAAGTCTGCCTGATATATTAGCAGAGCCCTCACCAAATGAAAGGCATGAATTTGTAATGGCACAATACATAAATGAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012473_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.408 C2=0.315
Domain overlap (PFAM):
C1:
NO
A:
PF102294=DUF2246=PU(11.6=65.3)
C2:
PF102294=DUF2246=FE(26.1=100),PF133151=DUF4085=PU(13.6=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTTGCTTCTCTTGCAG
R:
TTCATTTGGTGAGGGCTCTGC
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]