GgaEX0018868 @ galGal4
Exon Skipping
Gene
ENSGALG00000012473 | MMADHC
Description
Methylmalonic aciduria and homocystinuria type D homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKP2]
Coordinates
chr7:34433753-34436920:-
Coord C1 exon
chr7:34436162-34436920
Coord A exon
chr7:34434197-34434341
Coord C2 exon
chr7:34433753-34433970
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTGTCTTCTCAGGTG
3' ss Score
11.43
5' ss Seq
TATGTAAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
CACAAACGGCCCTTCTGCTCAGCATCGCGGCCCCTCAGCTCCCCCGGGCCAGGCCTGACCCGCGCCGCACTACTGACCCCTACCGCACCAAAGCGGCGTTGCTTACCCCACTCTGGCCAGGCCCTACCCGAGGGGAGCCCAGCCCCGACCAATCGATTGCCGGCTCGCTCGCCCCGCCGCCCCGAGCCCGCTTCAAACACGCCCCCACCACTGATCGATGGCTCATCGAGCGGCTGCTCAGGTCTGGCGGCCGAGGGGGTGAGGGCGGGGCGGAAGCGGCCGCCGCCATTTTGCAGGAAGCGCTGCGCGGGGCTCCTGGGTGCTCCCGCTGCGCCGCGGCCGTGTGACGGGGGAGAGGGGGGCGGCCCTGAGGGGGGAGCGGCCCGGGGTCGGCCGGCCGGCTGGTCGGTGCGGGGCCTCAGGAGACGCTGCGTTTGCTTCTCTTGCAGGAGGAGCCGGAGCGCTGGGCGAAGGGCTGCTGAGTGTCTGCCATGGCCAAC
Seq A exon
GTGCTCTGTAACAGAGCAAGATTGGTCACCTACCTACCAGGGTTTTATTCCTTAGTCAAAAGAGTTGTAAATCCCAAGGCTTTTTCTACAGCAGGTTCCTCTGGCTCAGACGAGCCTCATGTTGCTGCTACACCTCCTGATTTAT
Seq C2 exon
GTCCAAGAACTGTATGGCCCGATGAAGTAATGGGTCCATTTGGTCCTCAGGACCAGAGATTCCAGTTGCCTGGTAATATTGGTTTTGACTGTCACCTAAATGGTACTGCTGCTCAGAGGAAAAGCCAAGCCTCAAAAAGTCTGCCTGATATATTAGCAGAGCCCTCACCAAATGAAAGGCATGAATTTGTAATGGCACAATACATAAATGAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012473_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=0.315
Domain overlap (PFAM):
C1:
NO
A:
PF102294=DUF2246=PU(11.6=65.3)
C2:
PF102294=DUF2246=FE(26.1=100),PF133151=DUF4085=PU(13.6=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTTGCTTCTCTTGCAG
R:
TTCATTTGGTGAGGGCTCTGC
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]