GgaEX0020309 @ galGal4
Exon Skipping
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62750126-62752406:-
Coord C1 exon
chr4:62752306-62752406
Coord A exon
chr4:62751215-62751431
Coord C2 exon
chr4:62750126-62750196
Length
217 bp
Sequences
Splice sites
3' ss Seq
ATGGTTTTTGTTGGTTTTAGCCT
3' ss Score
7.23
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
TTTACAATGCACTCGGATCTTGGAAAAATTATTCAAAGTTTACTGGATGAGTTTTGGAAGAATCCACCAGTCCCGGCTCCTAGTTCAACATCGTTTCCATA
Seq A exon
CCTTTACAGCAAACCAGCTGGAATGCCTCCATATGCTCCTCAGGGGTTTCCATTTCTTCCTCCATACCCACCTCAAGAAACAAATAGAACAATGGCACCCGTGCCTGCTTCTGAATCGGTTTCTTCAAGCTACACTACAGACAAGCCTGCTGCTCCCTCTTATGGCTTGATTGCTGATCTGCCACTGCCTGTTCCAACAGCAGAAATGGTGCTTCAG
Seq C2 exon
GTTGGCCAGAACGGATTTACTTACAAGATGCCTGATGTTCCTGATACCTTTCCAGAACTTTTGGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-'5-7,'5-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.370 C2=0.042
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(28.4=67.6)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAATGCACTCGGATCTTGGA
R:
CTCAGTTCCAAAAGTTCTGGAAAGG
Band lengths:
172-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]