DreEX6030836 @ danRer10
Exon Skipping
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15777147-15780149:+
Coord C1 exon
chr1:15777147-15777244
Coord A exon
chr1:15777334-15777544
Coord C2 exon
chr1:15780079-15780149
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTGCCCCTCAGTAT
3' ss Score
8.21
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
TTTGGAATGCATTCAGATTTAGGCAAAGTAATTCAGAGTTTGCTAGATGAGTTCTGGAAAAGTCCTCCGGCCTTGACGTCAGATCCCACCTTTCCTTA
Seq A exon
TATGTACAAACCATCGGCAATGCCCCCTTACCCAACACAGAGCTTCCATTTTGTTCCTGCCTTCCAACCTCAGGATGGTCAGCGGCCGATTGGCCCAGCCCCTGTGCCACATGCAGGGATGGAGCCTCAACAAGCCCCTCCTAGACCAGCAGCACCAGCTTACGGACTCATCACAGACCTTCCACTTCCTGTACCAACTGCTGACTCACAG
Seq C2 exon
TCTGGCCTGAATGGACACATATACAAGATGCCTGATATCCCAGATACATTTTCAGAACTATCTGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.540 C2=0.583
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(28.4=69.7)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGCATTCAGATTTAGGCA
R:
AGATAGTTCTGAAAATGTATCTGGGA
Band lengths:
159-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]