HsaEX6079621 @ hg38
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17272949-17276467:+
Coord C1 exon
chr8:17272949-17273049
Coord A exon
chr8:17274776-17274958
Coord C2 exon
chr8:17276397-17276467
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTTATGCTTCTCAGGGT
3' ss Score
8.32
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
Exon sequences
Seq C1 exon
TCATCTACAAGAAAATATATATAGTATTGTATTTTCCCCCTTTTTTATATGAATGGTAGCATATTTTGCCCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
GGTTTTCCATTTCTTCCTCCATATCCTCCACAAGAAGCAAACAGGAGTATCACTTCTTTATCTGTTGCTGACACTGTTTCTTCTTCAACAACAAGTCATACCACAGCCAAGCCTGCCGCTCCTTCATTTGGTGTCCTTTCAAATCTGCCATTACCCATTCCCACAGTGGATGCTTCAATACCG
Seq C2 exon
ACAAGCCAAAATGGTTTTGGGTACAAGATGCCAGATGTCCCTGATGCATTTCCAGAACTCTCAGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-'23-16,'23-15,24-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.172 C2=0.194
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains