RnoEX6055673 @ rn6
Exon Skipping
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54869593-54875336:-
Coord C1 exon
chr16:54875236-54875336
Coord A exon
chr16:54871591-54871819
Coord C2 exon
chr16:54869593-54869663
Length
229 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCTCTCTTCAGCCT
3' ss Score
10.62
5' ss Seq
TCGGTCGGT
5' ss Score
3.52
Exon sequences
Seq C1 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAAAGTCTTTTGGATGAGTTCTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAACATTTCCATA
Seq A exon
CCTGTATAGTAATCCAGGTGGGATGCCTCCTTACCCTTCTCAGGGGTTTCCATTTCTTCCTTCCTACCCTCCACAAGAAGCTGCTAGCAGGAGCATCACTTCTTTGTCTGTAGCTGACACTGTTTCTTCTTCAACCACAAGTTACACTGCAGCCAAGCCTGTGGCGCCTTCATTTGGCATCCTTTCAAGTCTGCCATTACCAGTTCCCACAACAGAATCTTCAGCATCG
Seq C2 exon
ATTAACCAAAATGGTTTTGGTTATAAGATGCCGGATATTCCTGATGCATTTCCAGAACTTTCAGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001-'6-11,'6-8,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.250
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(27.7=67.6)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
ENSRNOT00000016321fB16376
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAATGCACTCAGATCTTGGA
R:
CTTAGTTCTGAAAGTTCTGGAAATGC
Band lengths:
172-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]