HsaEX6079621 @ hg19
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24928]
Coordinates
chr8:17126365-17133976:+
Coord C1 exon
chr8:17126365-17126465
Coord A exon
chr8:17132242-17132467
Coord C2 exon
chr8:17133906-17133976
Length
226 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTTTCTTTTCAGTCT
3' ss Score
10.67
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
Exon sequences
Seq C1 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAGAGTCTGTTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAGCATTTCCTTA
Seq A exon
TCTATACAGTAACCCAAGTGGGATGTCTCCTTATGCTTCTCAGGGTTTTCCATTTCTTCCTCCATATCCTCCACAAGAAGCAAACAGGAGTATCACTTCTTTATCTGTTGCTGACACTGTTTCTTCTTCAACAACAAGTCATACCACAGCCAAGCCTGCCGCTCCTTCATTTGGTGTCCTTTCAAATCTGCCATTACCCATTCCCACAGTGGATGCTTCAATACCG
Seq C2 exon
ACAAGCCAAAATGGTTTTGGGTACAAGATGCCAGATGTCCCTGATGCATTTCCAGAACTCTCAGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-'8-10,'8-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.194
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(28.4=67.6)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAATGCACTCAGATCTTGGA
R:
CTTAGTTCTGAGAGTTCTGGAAATGC
Band lengths:
172-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)