BtaEX0039722 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010355 | VPS37A
Description
Bos taurus vacuolar protein sorting 37 homolog A (S. cerevisiae) (VPS37A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046161]
Coordinates
chr27:19028140-19036344:-
Coord C1 exon
chr27:19036244-19036344
Coord A exon
chr27:19029466-19029691
Coord C2 exon
chr27:19028140-19028210
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTCTTTCTCTTTAGCCT
3' ss Score
11.34
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
Exon sequences
Seq C1 exon
TTTACAATGCATTCAGATCTTGGGAAAATTATTCAGAGTCTATTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTGCTTCAACAGCATTCCCATA
Seq A exon
CCTGTACAGTAACCCAGGTGGGATGCCTCCTTATGCTTCTCAGGGTTTCCCATTTCTTCCTCCGTATCCCCCACAAGAAGCTAACAGGACTATCAGCTCTTTATCTGTTGCTGACACTGTTTCTTCTTCAACAACAAGTTATACAACCGCCAAACCCGCTGCTCCTTCATTTGGTGTCCTTTCAAATCTGCCATTGCCCGTTCCCACAACAGACACTTCAACACCG
Seq C2 exon
ATAAGCCAAAATGGTTTTGCTTACAAGATGCCCGATATTCCTGATACATTTCCAGAACTCTCAGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010355_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.237 C2=0.458
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(28.0=67.6)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAATGCATTCAGATCTTGGGA
R:
CTTAGTTCTGAGAGTTCTGGAAATGT
Band lengths:
172-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development