MmuEX6035389 @ mm9
Exon Skipping
Gene
ENSMUSG00000031600 | Vps37a
Description
vacuolar protein sorting 37A (yeast) [Source:MGI Symbol;Acc:MGI:1261835]
Coordinates
chr8:41614463-41624734:+
Coord C1 exon
chr8:41614463-41614563
Coord A exon
chr8:41622224-41622449
Coord C2 exon
chr8:41624664-41624734
Length
226 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCTTTCTTTCTTCAGCCT
3' ss Score
8.49
5' ss Seq
TCGGTTGGT
5' ss Score
3.58
Exon sequences
Seq C1 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAAAGTCTTTTGGATGAGTTCTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAACATTTCCATA
Seq A exon
CCTGTATAGTAATCCAGGTGGGATGCCTCCGTACCCCTCCCAGGGGTTTCCATTTCTTCCTCCATATCCTCCACCAGAAGCTAACAGGAATATCACATCCTTGTCTGTAGCTGACACTGTTTCTTCTTCAACCACAAGTTACACTGCAGCTAAGCCCGTGGCGCCTTCATTTGGCATCCTTTCAAGTCTGCCATTACCAGTTCCCACAACTGAATCTTCAGCATCG
Seq C2 exon
GTTAACCAAAATGGTTTTGGTTATAAGATGCCGGATATTCCTGATGCATTTCCAGAACTTTCAGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031600-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.289 C2=0.292
Domain overlap (PFAM):
C1:
PF057438=UEV=PD(27.7=67.6)
A:
NO
C2:
PF072008=Mod_r=PU(2.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACAATGCACTCAGATCTTGGA
R:
CTTAGTTCTGAAAGTTCTGGAAATGC
Band lengths:
172-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: