GgaEX0024078 @ galGal3
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
NA
Coordinates
chr3:91479046-91481256:-
Coord C1 exon
chr3:91481136-91481256
Coord A exon
chr3:91480727-91480867
Coord C2 exon
chr3:91479046-91479138
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTTTTTTGCATAGAAA
3' ss Score
5.59
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CACAAATGTATGCAGCCAAAGGACTTTGTTGAGAAAACTCCAGAAAATGATAGAAAGCTGCAGAGAAGACTGGACCGAATGGCTAAGGAATTAGCTCAGCAAAGGATAGGAATTAATGCAG
Seq A exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
Seq C2 exon
CTTCCCAAATGTTTCAAGCATCTCCACGTTGCTCACAAGGAGACTGCCCTCTCTCTACCTCTTTAACTAATTCAGAAGACGCAGTATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.488 A=0.417 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAATGTATGCAGCCAAAGGA
R:
GCAATACTGCGTCTTCTGAATT
Band lengths:
211-352
Functional annotations
There are 0 annotated functions for this event