RnoEX6056038 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76081499-76085418:-
Coord C1 exon
chr16:76085304-76085418
Coord A exon
chr16:76083886-76084008
Coord C2 exon
chr16:76081499-76081588
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTATGGAGGTTTGTTTTCAGATG
3' ss Score
4.49
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CACAAGTGTATGCAGCCCAAAGATTTTATTCCTAAAACACCAGAAAATGACAAAAGACTTCAAAAGAAATTCGAGAAAATGGCTGAAGAGCTACAAAGGCAAAAGGCAGCTCTAG
Seq A exon
ATGACGACGTCCCTGTCCTCATGTTTGAGTCCCCTCAGTCACTGGTATACAGCTCCCCAGTAAACATGATGAAGAAGAGACTACAGGAGATGAAGGAGAAGAGGGAAAACCTTTCCCCTACCT
Seq C2 exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCGTGTGTCAGTCTGCTTAAAACATCCTTGAACATGTCTCACCAACCTTCGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=0.571 C2=1.000
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=FE(39.6=100)
A:
PF034059=FA_desaturase_2=PD(36.5=83.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGTATGCAGCCCAAAGA
R:
GAACTCGAAGGTTGGTGAGACA
Band lengths:
202-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]