MmuEX0028278 @ mm9
Exon Skipping
Gene
ENSMUSG00000039842 | Mcph1
Description
microcephaly, primary autosomal recessive 1 [Source:MGI Symbol;Acc:MGI:2443308]
Coordinates
chr8:18622607-18629635:+
Coord C1 exon
chr8:18622607-18622694
Coord A exon
chr8:18627118-18627240
Coord C2 exon
chr8:18629546-18629635
Length
123 bp
Sequences
Splice sites
3' ss Seq
CGGTGGAAGTTTGTTTTCAGATG
3' ss Score
2.77
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATGCAGGATGGCTGGAGCACTTGTTGATGAGTCTTTGTTCCCTGCAGTGAATACCGATGAACATCTACCAAACTTAAGTAGAAAAAAA
Seq A exon
ATGATGACGTTCCTGTCCTCCTGTTTGAGTCCCCTCGCTCACTGGTGTACAGCTCCCCAGTGAATGTGATGAAGAGGAGACTGCAGGATATGAAGGAGAAGAGGGAGAACCTTTCCCCTACCT
Seq C2 exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCATGTGTCAGTCTGTTTGAAACATCCTTGAACATTTCTCACCAACCTTTGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039842_MULTIEX1-2/5=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.175 A=0.336 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGGATGGCTGGAGCA
R:
CTGAACTCAAAGGTTGGTGAGA
Band lengths:
178-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types