GgaEX0024078 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88076935-88079145:-
Coord C1 exon
chr3:88079025-88079145
Coord A exon
chr3:88078616-88078756
Coord C2 exon
chr3:88076935-88077027
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTTTTTTGCATAGAAA
3' ss Score
5.59
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CACAAATGTATGCAGCCAAAGGACTTTGTTGAGAAAACTCCAGAAAATGATAGAAAGCTGCAGAGAAGACTGGACCGAATGGCTAAGGAATTAGCTCAGCAAAGGATAGGAATTAATGCAG
Seq A exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
Seq C2 exon
CTTCCCAAATGTTTCAAGCATCTCCACGTTGCTCACAAGGAGACTGCCCTCTCTCTACCTCTTTAACTAATTCAGAAGACGCAGTATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.512 A=0.438 C2=0.281
Domain overlap (PFAM):
C1:
PF070836=DUF1351=PU(43.0=90.2)
A:
PF070836=DUF1351=FE(54.7=100)
C2:
PF070836=DUF1351=PD(1.2=3.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAATGTATGCAGCCAAAGGA
R:
GCAATACTGCGTCTTCTGAATT
Band lengths:
211-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]