DreEX0045567 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6191640-6192426:-
Coord C1 exon
chr13:6192315-6192426
Coord A exon
chr13:6192099-6192230
Coord C2 exon
chr13:6191640-6191720
Length
132 bp
Sequences
Splice sites
3' ss Seq
GGAATGTTGTTTAAACACAGTTT
3' ss Score
1.19
5' ss Seq
CTGGTACCC
5' ss Score
3.61
Exon sequences
Seq C1 exon
CACTGTTGCATGCAACCAAGGAATATCCCGATAAAGACTCCAGAGAATGACAGACGGCTGAAAAGAAAAATTGACAAGATGATGGAAGGCCTGGTGCCCTCATCCCCTATCG
Seq A exon
TTTCGGACACCTCACCTTTTATCATTGATGAGGAACGTGGAATAGTGTACAGCCCCTCTTTAAAACGCTCTGACAGCATGGCTCAACGATTGAAAGAAATGAAAGCTGGACGTGAACATCTCTCACCCACTG
Seq C2 exon
CCTCACAGAAGCAGGACATTGGCTCAGAGCATGATCCATCCCCTCCAGCATCGACAGCTCTGTCTTTCTTGCAGCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=0.594 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATGCAACCAAGGAATATCC
R:
AGCTGCTGCAAGAAAGACAGA
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]