BtaEX6106368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4338625-4343004:+
Coord C1 exon
chr27:4338625-4338739
Coord A exon
chr27:4339692-4339835
Coord C2 exon
chr27:4342915-4343004
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACCGGATATTTATTTTCAGGTA
3' ss Score
7.56
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGCAAGTGTATGCAGCCCAAAGATTTTATTCCCAGAACACCAGAAAACGATAAAAGACTGCAAAGGAAATTTGAGAAAATGGCTAAAGAGCTGCAACAGCAGAAAACCACTCTGG
Seq A exon
GTACCAATGTTCCTGTTCTCTCATTTGAATCTAATGGCTCGTTGGTGTACAGTCCGACAGGTAAAGTCTGTAGGGGCCACCACAGTGCAATGAAGAAGAGGCTGCAGGAGATGAAGGAGAAACGGGAAAACCTTTCCCCCACCT
Seq C2 exon
CCTCCCAGATGATTGAACAGTCTGATGATAACACTGTGAACCTTCTGCATGAAGCATCTTTGAACCTTTCACATGATACTTTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032-'10-12,'10-8,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.490 C2=0.613
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=FE(52.8=100)
A:
PF034059=FA_desaturase_2=PD(9.7=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGTATGCAGCCCAAAG
R:
TGAACACAAAGTATCATGTGAAAGGT
Band lengths:
203-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]