GgaEX0026429 @ galGal3
Exon Skipping
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7182462-7185189:+
Coord C1 exon
chr18:7182462-7182510
Coord A exon
chr18:7182937-7183012
Coord C2 exon
chr18:7184991-7185189
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTTACTTTCCTACCCTGCAGGGT
3' ss Score
9.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCAGCTGATAAAGTTCCATCAGGATATCATGTAGAAGATTTAGAAGAAG
Seq A exon
GGTCCCGGGATGGCTGGCAGTTCCGTCCTCCACCCAGGGGAGTCACAAGCAGTGAAGAATATACACTATGTAAAAG
Seq C2 exon
ATTTTTAGAGCAAGGGATCTGCAGGTACGGTGCACAGTGTACTTCAGCACATTCCCAGGAAGAGCTAACAGAATGGCAAAAACGATATGCTTCCCGCTTGATCAGATTAAAACAGCAGAAGGAAAACAAACAATGTTCGGGCAGTTATATGGAAACCTTGATTGAGAAATGGATGAATTCGTTATCTCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.346 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGATAAAGTTCCATCAGGA
R:
CTGCTGTTTTAATCTGATCAAGCGG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]