MmuEX6090689 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107599150-107602508:+
Coord C1 exon
chr11:107599150-107599201
Coord A exon
chr11:107600276-107600351
Coord C2 exon
chr11:107602310-107602508
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCCACATTCCTCCTCCGTAGGGT
3' ss Score
10.59
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACAGCAACGAGTAATGTCCTGTCTGGATGTCACGTAGAAGACTTAGATGAAG
Seq A exon
GGTCCTGTAATGGTTGGCATTTCCGCCCACCGCCCAGGGGCATCACCAGCAGTGAGGAGTACACCTTGTGTAAGAG
Seq C2 exon
GTTTTTAGAGCAAGGGATCTGTAGGTACGGTGCCCAGTGTACTTCAGCACATTCCCAGGAAGAGCTAGCAGAGTGGCAGAAAAGATACGCCTCCCGACTGATCAAACTGAAGCAGCAAAGTGAGAATAAACAGCTCTCAGGCAGCTACATGGAGACCTTGATAGAGAAGTGGATGAGTTCACTGTCTCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-'16-21,'16-11,18-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCTGGATGTCACGTAGA
R:
GTAGCTGCCTGAGAGCTGTTT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types