HsaEX0029680 @ hg19
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65186273-65197301:-
Coord C1 exon
chr17:65197245-65197301
Coord A exon
chr17:65190083-65190158
Coord C2 exon
chr17:65186273-65186471
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATATCCTAATTACTCCCTAGGGT
3' ss Score
7.84
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AATGGGATGGTAACAAAGGATTTGACAAGACTAAAAACACTTCTCTCAGAAACAGAG
Seq A exon
GGTCTTGTAATGGTTGGCATTTCCGCCCACCACCTAGGGGAATCACAAGCAGCGAGGAATATACTTTGTGTAAAAG
Seq C2 exon
ATTTTTAGAACAAGGAATCTGTAGGTATGGTGCCCAGTGTACTTCAGCACATTCCCAGGAAGAACTAGCAGAATGGCAGAAAAGATATGCTTCACGGCTGATAAAATTGAAACAGCAAAATGAGAATAAACAGCTCTCAGGCAGTTACATGGAAACCTTGATAGAAAAGTGGATGAATTCATTGTCTCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACACTTCTCTCAGAAACAGAG
R:
CCATGTAACTGCCTGAGAGCTG
Band lengths:
176-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)