DreEX0037296 @ danRer10
Exon Skipping
Gene
ENSDARG00000030560 | helz
Description
helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
Coordinates
chr3:60739121-60742472:+
Coord C1 exon
chr3:60739121-60739163
Coord A exon
chr3:60740555-60740630
Coord C2 exon
chr3:60742274-60742472
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTCTCTCAGATG
3' ss Score
13.21
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCGGCGAGGAGTAAAGTGGTGTTTTCTGAAGAGAACGAGGAGG
Seq A exon
ATGTTCAGGAGGGCTGGCAGTTTCGTCCTCCTCCTCGAGGGGTCACTAGTAGTGAAGAATACACATTGTGCAAAAG
Seq C2 exon
GTTTTTGGAGCAGGGTCTGTGCCGGTACGGAGCTCAGTGCACCTCTGCTCACTCTCAGGAGGAGCTGACCGAATGGCAGCGGCGCTACGCCTCGCGCCTCATCCGCCTCAAGCAGCAGCAGGAGGGCAAACACTTCAGCGAGAACTACATGGAGGCGCTCATCGAGAAGTGGATCAACTCACTCACGCCCGAAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030560-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.346 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGGAGTAAAGTGGTGTT
R:
GAAGTGTTTGCCCTCCTGCTG
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]