GgaEX1004794 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GME5]
Coordinates
chr18:7140170-7142875:+
Coord C1 exon
chr18:7140170-7140196
Coord A exon
chr18:7140623-7140698
Coord C2 exon
chr18:7142677-7142875
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTTACTTTCCTACCCTGCAGGGT
3' ss Score
9.64
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATATCATGTAGAAGATTTAGAAGAAG
Seq A exon
GGTCCCGGGATGGCTGGCAGTTCCGTCCTCCACCCAGGGGAGTCACAAGCAGTGAAGAATATACACTATGTAAAAG
Seq C2 exon
ATTTTTAGAGCAAGGGATCTGCAGGTACGGTGCACAGTGTACTTCAGCACATTCCCAGGAAGAGCTAACAGAATGGCAAAAACGATATGCTTCCCGCTTGATCAGATTAAAACAGCAGAAGGAAAACAAACAATGTTCGGGCAGTTATATGGAAACCTTGATTGAGAAATGGATGAATTCGTTATCTCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027152_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]