RnoEX6050224 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95818998-95822801:+
Coord C1 exon
chr10:95818998-95819049
Coord A exon
chr10:95820497-95820572
Coord C2 exon
chr10:95822603-95822801
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGCATTCCTCCCTAGGGT
3' ss Score
10.48
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACAGCAACAAGTAATGCCCCCTCTGGCTGTCATGTGGAAGACTTAGATGAAG
Seq A exon
GGTCTTGTAATGGTTGGCATTTCCGCCCACCGCCCAGGGGGATCACCAGCAGTGAGGAGTACACCTTGTGTAAAAG
Seq C2 exon
GTTTTTAGAGCAAGGGATCTGTAGGTACGGTGCCCAGTGTACTTCAGCACATTCCCAGGAAGAACTAGCAGAATGGCAGAAGAGATATGCCTCGCGGCTGATAAAACTGAAGCAGCAGAGTGAGAACAAACAGCTCTCAGGCAGCTACATGGAGACCTTGATAGAAAAGTGGATGAGCTCACTGTCCCCTGAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(25.9=26.9)
C2:
PF0064219=zf-CCCH=PD(70.4=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGCTGTCATGTGGAAG
R:
ATGTAGCTGCCTGAGAGCTGT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]